Immune Repertoire Report

Sample Overview

Sample ID

SAMPLECODE

Species

—

Cell type

—

Sequencing reads

38,386,000

Read length

51 bp

GC content

44%

Poor-quality reads

0

BCR clonotypes

181

TCR clonotypes

164

Seq. quality score ⓘ

★★★☆☆

3.2 / 5

Score breakdown

✔Base seq. quality×33.0

✔Seq. quality scores×22.0

✘Adapter×20.0

✔Sequence Duplication×11.0

✘Base seq. content×10.0

⚠Seq. GC content×10.5

Raw 6.5 / 103.2 ★

Sequencing Quality

B Cell Receptor (BCR) Repertoire

—

Total clonotypes

—

IGH

—

—

IGK

—

—

IGL

—

—

Productive

—

0.000

Shannon Equitability ⓘ

Include sequences: Incomplete Non-coding Non-canonical

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All BCR Loci

BCR Clone List

[{"clone_id": 0, "locus": "IGH", "v_call": "IGHV1-18", "j_call": null, "cdr3_aa": "LSLIHIS", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 1, "locus": "IGH", "v_call": "IGHV1-32", "j_call": null, "cdr3_aa": "CVSLGQYM", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 2, "locus": "IGH", "v_call": "IGHV1-50", "j_call": null, "cdr3_aa": "CAR", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 3, "locus": "IGH", "v_call": "IGHV1-51", "j_call": null, "cdr3_aa": "CARF", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 4, "locus": "IGH", "v_call": "IGHV1-53", "j_call": null, "cdr3_aa": "CAR", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 5, "locus": "IGH", "v_call": "IGHV1-53", "j_call": null, "cdr3_aa": "CASSLDTEL", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 6, "locus": "IGH", "v_call": "IGHV1-62-1", "j_call": null, "cdr3_aa": "ASRDGS", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 7, "locus": "IGH", "v_call": "IGHV1-67", "j_call": null, "cdr3_aa": "C", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 8, "locus": "IGH", "v_call": "IGHV1-70", "j_call": null, "cdr3_aa": "CARHSVVT", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 9, "locus": "IGH", "v_call": "IGHV1-70", "j_call": null, "cdr3_aa": "I", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 10, "locus": "IGH", "v_call": "IGHV1-70", "j_call": null, "cdr3_aa": "CATDAQCVAGTCS", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 11, "locus": "IGH", "v_call": "IGHV1-76", "j_call": null, "cdr3_aa": "CAVSTQCFPDTCS", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 12, "locus": "IGH", "v_call": "IGHV1-79", "j_call": null, "cdr3_aa": "N", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 13, "locus": "IGH", "v_call": "IGHV1-82", "j_call": "IGHJ3", "cdr3_aa": "CALVDTVTETVGG", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 14, "locus": "IGH", "v_call": "IGHV1-82", "j_call": null, "cdr3_aa": "CVPAI", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 15, "locus": "IGH", "v_call": "IGHV1-82", "j_call": null, "cdr3_aa": "CALSTQCVG", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 16, "locus": "IGH", "v_call": "IGHV1-8", "j_call": null, "cdr3_aa": "HIHHR", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 17, "locus": "IGH", "v_call": "IGHV1-8", "j_call": null, "cdr3_aa": "KYQFPDQ", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 18, "locus": "IGH", "v_call": "IGHV12-1-1", "j_call": null, "cdr3_aa": "LV", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 19, "locus": "IGH", "v_call": "IGHV12-3", "j_call": "IGHJ4", "cdr3_aa": "LLIYSN", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 20, "locus": "IGH", "v_call": "IGHV12-3", "j_call": null, "cdr3_aa": "CLL", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 21, "locus": "IGH", "v_call": "IGHV13-1", "j_call": null, "cdr3_aa": "L", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 22, "locus": "IGH", "v_call": "IGHV13-2", "j_call": null, "cdr3_aa": "LSKLPVP", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 23, "locus": "IGH", "v_call": "IGHV14-1", "j_call": null, "cdr3_aa": "CTT", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 24, "locus": "IGH", "v_call": "IGHV1S132", "j_call": null, "cdr3_aa": "CAYLFHK", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 25, "locus": "IGH", "v_call": "IGHV1S18", "j_call": null, "cdr3_aa": "QRPGGS", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 26, "locus": "IGH", "v_call": "IGHV1S45", "j_call": null, "cdr3_aa": "CARPVS", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 27, "locus": "IGH", "v_call": "IGHV1S52", "j_call": null, "cdr3_aa": "CAVSAQCSPG", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 28, "locus": "IGH", "v_call": "IGHV2-6-1", "j_call": null, "cdr3_aa": "CAASAHCS", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 29, "locus": "IGH", "v_call": "IGHV2-7", "j_call": "IGHJ1", "cdr3_aa": "F", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 30, "locus": "IGH", "v_call": "IGHV2-7", "j_call": "IGHJ4", "cdr3_aa": "CAMRDTVAETA", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 31, "locus": "IGH", "v_call": "IGHV2-7", "j_call": null, "cdr3_aa": "CALGD", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 32, "locus": "IGH", "v_call": "IGHV2-7", "j_call": null, "cdr3_aa": "VK", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 33, "locus": "IGH", "v_call": "IGHV3-5", "j_call": null, "cdr3_aa": "CAVWI", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 34, "locus": "IGH", "v_call": "IGHV3-5", "j_call": null, "cdr3_aa": "LSLIHI", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 35, "locus": "IGH", "v_call": "IGHV3-8", "j_call": null, "cdr3_aa": "CARD", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 36, "locus": "IGH", "v_call": "IGHV4-2", "j_call": null, "cdr3_aa": "CAR", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 37, "locus": "IGH", "v_call": "IGHV5-1", "j_call": null, "cdr3_aa": "CLRHTVSECY", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 38, "locus": "IGH", "v_call": "IGHV5S24", "j_call": null, "cdr3_aa": "CACWDTLYQD", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 39, "locus": "IGH", "v_call": "IGHV6-4", "j_call": "IGHJ3", "cdr3_aa": "CTGWF", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 40, "locus": "IGH", "v_call": "IGHV7-2", "j_call": null, "cdr3_aa": "CAIDPQCSP", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 41, "locus": "IGH", "v_call": "IGHV8-11", "j_call": "IGHJ2", "cdr3_aa": "CCLLYT", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 42, "locus": "IGH", "v_call": "IGHV8-12", "j_call": null, "cdr3_aa": "CAR", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 43, "locus": "IGH", "v_call": "IGHV8-14", "j_call": null, "cdr3_aa": "TSLGTSKKLER", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 44, "locus": "IGH", "v_call": "IGHV8-4", "j_call": null, "cdr3_aa": "CALSDTVR", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 45, "locus": "IGH", "v_call": "IGHV8-7", "j_call": null, "cdr3_aa": "ILFSPLALR", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 46, "locus": "IGH", "v_call": "IGHV8-8-1", "j_call": null, "cdr3_aa": "DST", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 47, "locus": "IGH", "v_call": "IGHV9-2-1", "j_call": "IGHJ4", "cdr3_aa": "CAMEPQCSPHTSS", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 48, "locus": "IGH", "v_call": "IGHV9-2-1", "j_call": null, "cdr3_aa": "CAA", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 49, "locus": "IGH", "v_call": "IGHV9-4", "j_call": null, "cdr3_aa": "CARHSVK", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 50, "locus": "IGK", "v_call": "IGKV1-115", "j_call": null, "cdr3_aa": "CQPLRFQKTPPIL", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 51, "locus": "IGK", "v_call": "IGKV1-117", "j_call": null, "cdr3_aa": "CFQGSHVPPT", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 52, "locus": "IGK", "v_call": "IGKV1-122", "j_call": null, "cdr3_aa": "CL", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 53, "locus": "IGK", "v_call": "IGKV1-131", "j_call": null, "cdr3_aa": "CLQGTHFPHTVIQT", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 54, "locus": "IGK", "v_call": "IGKV1-131", "j_call": null, "cdr3_aa": "LX", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 55, "locus": "IGK", "v_call": "IGKV11-125", "j_call": null, "cdr3_aa": "CLQSYL", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 56, "locus": "IGK", "v_call": "IGKV11-125", "j_call": null, "cdr3_aa": "EAVSYTH", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 57, "locus": "IGK", "v_call": "IGKV11-125", "j_call": null, "cdr3_aa": "CLQHRYL", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 58, "locus": "IGK", "v_call": "IGKV12-38", "j_call": "IGKJ1", "cdr3_aa": "CNKTF", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": true, "n_incomplete": 0}, {"clone_id": 59, "locus": "IGK", "v_call": "IGKV12-41", "j_call": null, "cdr3_aa": "CQHLQARSKCRSKPLC", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 60, "locus": "IGK", "v_call": "IGKV12-44", "j_call": null, "cdr3_aa": "CQHHYGTPCLLYTS", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 61, "locus": "IGK", "v_call": "IGKV12-66", "j_call": null, "cdr3_aa": "CQQQG", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 62, "locus": "IGK", "v_call": "IGKV12-66", "j_call": null, "cdr3_aa": "CQHHYSTPPTVVQ", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 63, "locus": "IGK", "v_call": "IGKV12-98", "j_call": null, "cdr3_aa": "CQQFTVL", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 64, "locus": "IGK", "v_call": "IGKV13-76", "j_call": null, "cdr3_aa": "E", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 65, "locus": "IGK", "v_call": "IGKV13-82", "j_call": null, "cdr3_aa": "CEQYLVY", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 66, "locus": "IGK", "v_call": "IGKV13-82", "j_call": null, "cdr3_aa": "RY", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 67, "locus": "IGK", "v_call": "IGKV13-84", "j_call": null, "cdr3_aa": "CQQNFNHDTM", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 68, "locus": "IGK", "v_call": "IGKV14-126", "j_call": null, "cdr3_aa": "CLQHGESPPTLIQVIT", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 69, "locus": "IGK", "v_call": "IGKV14-130", "j_call": null, "cdr3_aa": "CLQYSEH", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 70, "locus": "IGK", "v_call": "IGKV14-130", "j_call": null, "cdr3_aa": "CLQ", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 71, "locus": "IGK", "v_call": "IGKV15-101", "j_call": "IGKJ5", "cdr3_aa": "NHGMEL", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 72, "locus": "IGK", "v_call": "IGKV15-102", "j_call": null, "cdr3_aa": "CVQ", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 73, "locus": "IGK", "v_call": "IGKV17-127", "j_call": null, "cdr3_aa": "YLQSDNMPLTVLC", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 74, "locus": "IGK", "v_call": "IGKV19-93", "j_call": null, "cdr3_aa": "YLQYDRVSL", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 75, "locus": "IGK", "v_call": "IGKV2-109", "j_call": null, "cdr3_aa": "LELPPTL", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 76, "locus": "IGK", "v_call": "IGKV2-112", "j_call": null, "cdr3_aa": "REQLVG", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 77, "locus": "IGK", "v_call": "IGKV2-112", "j_call": null, "cdr3_aa": "CQQLVEYPCL", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 78, "locus": "IGK", "v_call": "IGKV20-101-2", "j_call": null, "cdr3_aa": "CQQ", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 79, "locus": "IGK", "v_call": "IGKV20-101-2", "j_call": null, "cdr3_aa": "D", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 80, "locus": "IGK", "v_call": "IGKV3-8", "j_call": null, "cdr3_aa": "CALRGSHSD", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 81, "locus": "IGK", "v_call": "IGKV3-9", "j_call": null, "cdr3_aa": "CMQSMEDPPTVLQG", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 82, "locus": "IGK", "v_call": "IGKV4-59", "j_call": null, "cdr3_aa": "CQQWSSN", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 83, "locus": "IGK", "v_call": "IGKV4-61", "j_call": null, "cdr3_aa": "EYSA", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 84, "locus": "IGK", "v_call": "IGKV4-61", "j_call": null, "cdr3_aa": "CQQYQLHPPTK", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 85, "locus": "IGK", "v_call": "IGKV4-78", "j_call": null, "cdr3_aa": "CQQYSGYPST", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 86, "locus": "IGK", "v_call": "IGKV4-90", "j_call": null, "cdr3_aa": "CQQRSSYP", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 87, "locus": "IGK", "v_call": "IGKV4-91", "j_call": null, "cdr3_aa": "LTQASGSLN", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 88, "locus": "IGK", "v_call": "IGKV4-91", "j_call": null, "cdr3_aa": "CQQMESDPN", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 89, "locus": "IGK", "v_call": "IGKV4-91", "j_call": null, "cdr3_aa": "CQQGSSIPRTPCYRLKQE", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 90, "locus": "IGK", "v_call": "IGKV5-39", "j_call": null, "cdr3_aa": "CKNGHSSI", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 91, "locus": "IGK", "v_call": "IGKV5-48", "j_call": null, "cdr3_aa": "CQQSNSWPTTV", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 92, "locus": "IGK", "v_call": "IGKV6-14", "j_call": null, "cdr3_aa": "CLQHWNY", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 93, "locus": "IGK", "v_call": "IGKV6-20", "j_call": null, "cdr3_aa": "CGQSY", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 94, "locus": "IGK", "v_call": "IGKV8-16", "j_call": null, "cdr3_aa": "CQQHLHIPPTVL", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 95, "locus": "IGK", "v_call": "IGKV8-19", "j_call": null, "cdr3_aa": "FQNEDIIDKID", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 96, "locus": "IGK", "v_call": "IGKV8-26", "j_call": null, "cdr3_aa": "CQLLAAFISI", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 97, "locus": "IGK", "v_call": "IGKV9-119", "j_call": null, "cdr3_aa": "FIK", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 98, "locus": "IGK", "v_call": "IGKV9-119", "j_call": null, "cdr3_aa": "CLQYASSP", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 99, "locus": "IGK", "v_call": "IGKV9-123", "j_call": null, "cdr3_aa": "CLQRNA", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 100, "locus": "IGK", "v_call": "IGKV9-124", "j_call": null, "cdr3_aa": "CLQYASYPPTVIQI", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 101, "locus": "IGK", "v_call": "IGKV9-128", "j_call": null, "cdr3_aa": "LS", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 102, "locus": "IGL", "v_call": "IGLV3", "j_call": null, "cdr3_aa": "CAASTHCF", "clone_count": 1, "clone_freq": 0.0097087378640776, "productive": true, "canonical": false, "n_incomplete": 0}]

T Cell Receptor (TCR) Repertoire

—

Total clonotypes

—

TRA

—

—

TRB

—

—

TRG

—

—

TRD

—

—

Productive

—

0.918

Shannon Equitability ⓘ

Include sequences: Incomplete Non-coding Non-canonical

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All TCR Loci

TCR Clone List

[{"clone_id": 18, "locus": "TRA", "v_call": "TRAV5-4", "j_call": null, "cdr3_aa": "L", "clone_count": 2, "clone_freq": 0.0246913580246913, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 61, "locus": "TRD", "v_call": "TRDV2-1", "j_call": "TRAJ13", "cdr3_aa": "CAPRF", "clone_count": 2, "clone_freq": 0.0246913580246913, "productive": true, "canonical": true, "n_incomplete": 0}, {"clone_id": 0, "locus": "TRA", "v_call": "TRAV10", "j_call": null, "cdr3_aa": "CAASTHCF", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 3, "locus": "TRA", "v_call": "TRAV12N-2", "j_call": null, "cdr3_aa": "LKLYTTSVSYT", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 4, "locus": "TRA", "v_call": "TRAV13-4/DV7", "j_call": null, "cdr3_aa": "ACT", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 1, "locus": "TRA", "v_call": "TRAV11", "j_call": null, "cdr3_aa": "CVDTEVSVTYY", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 2, "locus": "TRA", "v_call": "TRAV12-2", "j_call": null, "cdr3_aa": "CALPGSL", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 7, "locus": "TRA", "v_call": "TRAV14-1", "j_call": "TRAJ42", "cdr3_aa": "CAASGVTV", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 8, "locus": "TRA", "v_call": "TRAV14D-2", "j_call": null, "cdr3_aa": "LSL", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 9, "locus": "TRA", "v_call": "TRAV16", "j_call": null, "cdr3_aa": "CAR", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, 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0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 49, "locus": "TRB", "v_call": "TRBV20", "j_call": null, "cdr3_aa": "CEF", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 48, "locus": "TRB", "v_call": "TRBV20", "j_call": null, "cdr3_aa": "SVRSRPPL", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 51, "locus": "TRB", "v_call": "TRBV23", "j_call": null, "cdr3_aa": "LLYN", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 52, "locus": "TRB", "v_call": "TRBV23", "j_call": null, "cdr3_aa": "CCDLH", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 53, "locus": "TRB", "v_call": "TRBV23", "j_call": null, "cdr3_aa": "SSSSLGLSWQG", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 50, "locus": "TRB", "v_call": "TRBV21", "j_call": null, "cdr3_aa": "CVCSQCGL", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 54, "locus": "TRB", "v_call": "TRBV23", "j_call": null, "cdr3_aa": "CSSSQSTALKCALP", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 55, "locus": "TRB", "v_call": "TRBV2", "j_call": null, "cdr3_aa": "LPA", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 57, "locus": "TRB", "v_call": "TRBV31", "j_call": null, "cdr3_aa": "CAWSLTLSRVG", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 56, "locus": "TRB", "v_call": "TRBV2", "j_call": null, "cdr3_aa": "TCLLYTS", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 58, "locus": "TRB", "v_call": "TRBV3", "j_call": null, "cdr3_aa": "QPCSSLGNLAHI", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 59, "locus": "TRB", "v_call": "TRBV9", "j_call": null, "cdr3_aa": "CALAAI", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 60, "locus": "TRB", "v_call": "TRBV9", "j_call": null, "cdr3_aa": "SAVRPEG", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 62, "locus": "TRD", "v_call": "TRDV2-1", "j_call": "TRAJ5", "cdr3_aa": "CALTWQLTAPG", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 63, "locus": "TRD", "v_call": "TRDV2-1", "j_call": null, "cdr3_aa": "CALCSS", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 64, "locus": "TRD", "v_call": "TRDV2-1", "j_call": null, "cdr3_aa": "CALRGSHSD", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 65, "locus": "TRD", "v_call": "TRDV4", "j_call": null, "cdr3_aa": "CGSDIHGATVPL", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 66, "locus": "TRD", "v_call": "TRDV5", "j_call": "TRAJ11", "cdr3_aa": "CQQSNSWPTTV", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 67, "locus": "TRD", "v_call": "TRDV5", "j_call": null, "cdr3_aa": "CEQYLVY", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 68, "locus": "TRG", "v_call": "TRGV1", "j_call": null, "cdr3_aa": "CLQHRYL", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 69, "locus": "TRG", "v_call": "TRGV2", "j_call": null, "cdr3_aa": "CVQ", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 70, "locus": "TRG", "v_call": "TRGV3", "j_call": null, "cdr3_aa": "CAVWI", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 71, "locus": "TRG", "v_call": "TRGV4", "j_call": null, "cdr3_aa": "CSFKKTVFEQLRHC", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 72, "locus": "TRG", "v_call": "TRGV5", "j_call": null, "cdr3_aa": "CAR", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 1}, {"clone_id": 73, "locus": "TRG", "v_call": "TRGV6", "j_call": "TRGJ2", "cdr3_aa": "CFQGSHVPPT", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 74, "locus": "TRG", "v_call": "TRGV6", "j_call": null, "cdr3_aa": "CAR", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 75, "locus": "TRG", "v_call": "TRGV6", "j_call": null, "cdr3_aa": "CARD", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 76, "locus": "TRG", "v_call": "TRGV6", "j_call": null, "cdr3_aa": "CTGWF", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 77, "locus": "TRG", "v_call": "TRGV6", "j_call": null, "cdr3_aa": "CARHSVK", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}, {"clone_id": 78, "locus": "TRG", "v_call": "TRGV6", "j_call": null, "cdr3_aa": "CLRHTVSECY", "clone_count": 1, "clone_freq": 0.0123456790123456, "productive": true, "canonical": false, "n_incomplete": 0}]

Expert Annotation

Analysis performed by: Benjamin Viart Date: 04 June 2026 Sample: Mouse_BCELL_SRR25079534

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Sequencing quality This is a test sample to showcase the immunomotif RNAseq Repertoire Pipeline results

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BCR repertoire BCR clone analysis only contains on IGK chain, to show non-canonical, non-coding and incomplete clones use the 'Include Sequences Panel'

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TCR repertoire TCR clone analysis show one TRA and one TRD chains, which are not complementary chains.

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This report is confidential and intended solely for the named recipient.